Expansion of autonomics to input from Salmon-quantified Transcriptomic data

Bioinformatics & Data Science
R programming
Difficulty: Entry Level
Bachelor of Science

Johannes Graumann


January 18, 2023

Expanding the existing capabilities of autonomics and following existing functionality as a template, the project aims at adapting the platform to deal with input data generated by Salmon (Patro et al. 2017), a method for quantifying transcriptomic differences.


Patro, Rob, Geet Duggal, Michael I. Love, Rafael A. Irizarry, and Carl Kingsford. 2017. “Salmon Provides Fast and Bias-Aware Quantification of Transcript Expression.” Nature Methods 14 (4): 417–19. https://doi.org/10.1038/nmeth.4197.